Profluent
Profluent9mo ago
USD 180000-250000/yr

Machine Learning Scientist

United StatesEmeryville · Hybrid (2Hybridmid
Data ScienceMachine Learning ScientistData & AI
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Quick Summary

Overview

Profluent is an AI-first protein design company. Founded in 2022, we develop deep generative models to design and validate novel, functional proteins to revolutionize biomedicine. Based in Emeryville,

Technical Tools
Data ScienceMachine Learning ScientistData & AI

Profluent is an AI-first protein design company. Founded in 2022, we develop deep generative models to design and validate novel, functional proteins to revolutionize biomedicine. Based in Emeryville, CA, we are backed by leading investors including Altimeter Capital, Bezos Expeditions, Spark Capital, Insight Partners, Air Street Capital, AIX Ventures, and Convergent Ventures, and have raised over $150M to date.

We're looking for a motivated and creative Machine Learning (ML) Scientist to drive research into new technologies for biomolecular design. This position offers an opportunity to work at the forefront of generative modeling research across language processing, representation learning, and protein engineering. You should be a self-directed researcher who has the ability to rapidly prototype and evaluate new models and algorithms in the biomolecular domain. 

As an early employee, you will proactively shape the direction of our machine learning efforts and collaborate across diverse teams of computational and experimental scientists.

Responsibilities

~1 min read
  • Design and develop state-of-the-art deep learning methods for protein sequence, structure, and function prediction and apply them to protein design
  • Curate relevant datasets and design tasks for rigorous evaluation of generative models 
  • Collaborate with Biology team to design and characterize novel designed biomolecules
  • Implement, analyze, and interpret multiple computational approaches and present results to colleagues in regular update meetings
  • Work within a collaborative, fast-paced, interdisciplinary team across biology and machine learning to help shape the scientific and strategic vision of the company

Requirements

~1 min read
  • PhD (or equivalent industry experience) in Computer Science, Machine Learning, Natural Language Processing, Applied Math, Computational Biology, Statistics, or a related field
  • Experience with conceiving of, implementing, and evaluating novel machine learning techniques
  • Publications at major machine learning conferences (NeurIPS, ICML, ICLR) or scientific journals (Nature, Science, Nature Biotech, Nature Methods, PNAS)
  • Experience with modern deep learning frameworks such as Pytorch or Jax
  • Familiarity with foundational biology of proteins and nucleic acids
  • Experience developing machine learning models for proteins (language models, structure prediction, design)
  • Previous experience in data extraction and curation from bioinformatics data sources
  • Familiarity with wet lab experimental assays and associated limitations
  • Experience with cloud compute platforms (GCP, AWS, Azure)

What We Offer

~1 min read
High-growth opportunity with meaningful impact on the future of protein design
Competitive compensation package with equity participation
401(k) with a strong employer match
Comprehensive benefits including health/dental/vision insurance
Generous PTO policy and commitment to work-life balance
Professional development opportunities in a cutting-edge field at the intersection of AI and biology

Legal authorization to work in the United States is required. In compliance with federal law, all persons hired must verify their identity and work eligibility and complete the required employment verification form upon hire.

Hiring Salary Range
$180,000$250,000 USD

Listing Details

Posted
July 3, 2025
First seen
April 3, 2026
Last seen
April 27, 2026

Posting Health

Days active
23
Repost count
0
Trust Level
44%
Scored at
April 27, 2026

Signal breakdown

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Profluent
Profluent
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Profluent is an AI-first protein design company focused on developing generative models to create novel proteins for transformative applications in biomedicine.

Employees
125
Founded
2022
View company profile
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ProfluentMachine Learning Scientist USD 180000-250000